18 Sep 2007 08:00 PM
Metagenomics Of The Deep Mediterranean
Metagenomics is a revolutionary approach to study microbes. Rather than
isolating pure cultures, the power of high-throughput sequencing is
applied
directly to environmental samples to obtain information about the genomes
of the prokaryotic cells present in a specific habitat studied. The ocean
is
an ideal subject of this approach because of its enormous microbiota,
whose biomass equals that of all other living organisms on earth is mostly
microbial, and also because most of these microbes are extremely
fastidious to cultivate.
Craig Venter pioneered these studies and has sampled the surface of the World oceans, but has only scraped the surface. Only one study carried out in Hawaii Ocean Time Series (or HOT) station has analyzed the metagenome of different depths down to 4000m showing the enormous diversity hidden there. This article describes the second study of the bathypelagic region, in this case at a station located over the Ionian abyssal plain, a flat deep basin occupying most of the space between Sicily and Greece in the Eastern Mediterranean. The deep waters of the Mediterranean are special in being free from the intrusion of polar waters that feed most the bottom of the global ocean. The Ionian sample comes from 3000 m deep and is submitted to a continuous pressure of 300 Kg/cm2 but contrastingly to most deep…
Craig Venter pioneered these studies and has sampled the surface of the World oceans, but has only scraped the surface. Only one study carried out in Hawaii Ocean Time Series (or HOT) station has analyzed the metagenome of different depths down to 4000m showing the enormous diversity hidden there. This article describes the second study of the bathypelagic region, in this case at a station located over the Ionian abyssal plain, a flat deep basin occupying most of the space between Sicily and Greece in the Eastern Mediterranean. The deep waters of the Mediterranean are special in being free from the intrusion of polar waters that feed most the bottom of the global ocean. The Ionian sample comes from 3000 m deep and is submitted to a continuous pressure of 300 Kg/cm2 but contrastingly to most deep…

